PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0324811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 166aa    MW: 19437.3 Da    PI: 10.0303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0324811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1531.4e-47131402128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                              pGfrFhPt+eel+ +yLk  v gk+l++ ++i+ ++iy+++PwdLp   k +e+ewyfF++rd+++ +g r+nr+t++g+Wkatg+
  RcHm_v2.0_Chr1g0324811  13 LPGFRFHPTEEELLEFYLKSVVFGKRLRF-DIIEFLNIYRHDPWDLPGLSKFGEREWYFFVPRDRNHGSGGRPNRTTETGFWKATGS 98 
                             59*************************99.99***************8777899********************************* PP

                     NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             d++++s    ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl
  RcHm_v2.0_Chr1g0324811  99 DRKIVSLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 140
                             ****997666778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MASEMTPPAE LKLPGFRFHP TEEELLEFYL KSVVFGKRLR FDIIEFLNIY RHDPWDLPGL  60
SKFGEREWYF FVPRDRNHGS GGRPNRTTET GFWKATGSDR KIVSLSDPKR IIGLRKTLVF  120
YKGRAPRGTK TDWVMNEYRL PDNCKLLKVN IDASQFNFFV VCTTSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.19e-84NAC family protein