PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0324821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 485aa    MW: 54961.7 Da    PI: 4.8155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0324821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.91.6e-3981601128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeek.ewyfFsk 63 
                             +p+G+rFhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp+                       +v+ +++ +wyfF++
  RcHm_v2.0_Chr1g0324821   8 VPKGYRFHPSDEELLSHYLEEKNKCKDSQITTIIPEIDVCKHEPRELPElaftraeslgrkfffffffwvarEVSWDNQgKWYFFTP 94 
                             589***************************999***************6689*****999999999998876444344459****** PP

                     NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             rd ky++++r+nr+t +g+Wk tgkd+++++  +++++g k+tL+fyk   pk++kt+Wv+hey l
  RcHm_v2.0_Chr1g0324821  95 RDYKYNNSTRSNRTTGEGFWKITGKDRAIKAPgSKAVIGRKRTLTFYKRGVPKSQKTSWVIHEYYL 160
                             *******************************9666779**************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    
MCCGGFTVPK GYRFHPSDEE LLSHYLEEKN KCKDSQITTI IPEIDVCKHE PRELPELAFT  60
RAESLGRKFF FFFFFWVARE VSWDNQGKWY FFTPRDYKYN NSTRSNRTTG EGFWKITGKD  120
RAIKAPGSKA VIGRKRTLTF YKRGVPKSQK TSWVIHEYYL IQAHSDPPKQ IGDFVVCCLK  180
YKSDNFDHDK DAPFCDRGSS SRSMASNVEN QAEENWASKE LVNVVPIPSG NDDEAETGGA  240
MITEEEEYLT LKELRDTLQI PIGNPHEFEV QGRQTDPCRI DKKDPSTDVE GQPDRSNSSD  300
MIEELLDDPE NLDSLFHPPA PPQLHQSPMH TTNIHNDECR KRTYPFEHND PSLTKKNNIS  360
TNDNDELVSN IASSSENQAA NMIPEGYSQL GANLGSEFDS FLPNNYNYTL PSINGGPRDF  420
SHDNNFIELD DLLSSYEGID YSLAQFLHTV IDGGRGVTSD RNTEVVHGSV NDYSALAIGA  480
TLQRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-35NAC family protein