PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0325171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 174aa    MW: 19702.3 Da    PI: 8.0917
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0325171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox505e-163290456
                            -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                            R+ +t++ +++L+el+     + p+ e+ ++++ +l    +++ ++V++WFqN+Ra+ek
  RcHm_v2.0_Chr1g0325171 32 RWLPTTDHIRILKELYDDkgVKSPTVEQVQRITLQLkwygQIENKNVFYWFQNQRAREK 90
                            9****************6579*************************************9 PP
2Wus_type_Homeobox91.11e-292991263
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                            ++ RW Pt++ i+iL+ely+ +G+++P+ e++qrit +L+ yG+ie+kNVfyWFQN++aRe+ 
  RcHm_v2.0_Chr1g0325171 29 SNIRWLPTTDHIRILKELYDdKGVKSPTVEQVQRITLQLKWYGQIENKNVFYWFQNQRAREKL 91
                            578****************999***************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MEPQNWHPTE DGGSNKAAES CPNMHCKQSN IRWLPTTDHI RILKELYDDK GVKSPTVEQV  60
QRITLQLKWY GQIENKNVFY WFQNQRAREK LQKKKLTSDV QVPKQRSGLV GGSIMEQKGE  120
DHQEIKTLPL FPMHGEDIFG NMKTTSDEGG GHGGGSYISL ELSLSCEGKA GKIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-26WOX family protein