PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0326161
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27967.7 Da    PI: 9.1354
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0326161genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.2e-199451551
                            HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            +R +++lKKA+ELS+LCdaeva+i fs++g+l+eyss
  RcHm_v2.0_Chr1g0326161  9 RRHATLLKKANELSILCDAEVAIIAFSPDGELHEYSS 45
                            5999*******************************96 PP
2K-box28.18.4e-11811582198
                   K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                              + L+++ + L+ e+ +++G++L+ Ls   L  L +q  k+l  + skK ell e++++++ +e+++ +en  L++kl
  RcHm_v2.0_Chr1g0326161  81 KQELQERHKALRLEKLQRMGKELDGLSSDALATLLEQQTKGLLAVHSKKVELLEEKLQRSRTREEQAMHENGLLEEKL 158
                             45799*******************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MPKTANPGRR HATLLKKANE LSILCDAEVA IIAFSPDGEL HEYSSTSMEH TLERYKNRTG  60
LVLPSRVESP APEEHRHEPA KQELQERHKA LRLEKLQRMG KELDGLSSDA LATLLEQQTK  120
GLLAVHSKKV ELLEEKLQRS RTREEQAMHE NGLLEEKLLR SRSREEQTMH ENKSLRRRIG  180
GFMMRQNYKR HILSCHPANY FDRNFGNRMG FCTSSRAAVS VSNYPSEGTD DHLDMTTLRL  240
WPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-22MIKC_MADS family protein