PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0328631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 59aa    MW: 6721.01 Da    PI: 9.9084
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0328631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.24e-094552575
                   NF-YC 25 rikkilkadedvkmis.aeaPvllskacelfileltlrswlhaeenkrrtlk 75
                            rikki++adedv +i+ a +  l +ka elf+ +l  r++  + +   +t++
  RcHm_v2.0_Chr1g0328631  4 RIKKIMQADEDVGKIAlAGIRLLKTKALELFLQDLCDRTYEITLQRGAKTMN 55
                            9**************9456777889**************9999888888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    
MQVRIKKIMQ ADEDVGKIAL AGIRLLKTKA LELFLQDLCD RTYEITLQRG AKTMNSVQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-23NF-YC family protein