PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0328761

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 300aa MW: 32833.3 Da PI: 5.0697

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0328761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.1	1.1e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r RcHm_v2.0_Chr1g0328761 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSVHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAAAD DRAITKRRKP PGDECIDSDE 120 ELKRSKMLEV SHGSSSGRGR GRGRGRGRGR GARTTEREPV HHETESEPCT SLQQSSKLNI 180 NPGMAVDDVS ESKELLKENV SVPDESDPTV RNFDLNADVH ENEDTKAAAA AAQASSAAAA 240 QASSAAAAQA SSAAPTSETK HEEYPGWSLS DVDKMAIDPL QLAQMSKRLD EDEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	140	149	RGRGRGRGRG
4	140	150	RGRGRGRGRGR
5	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-80	NF-YC family protein