PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0333781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 95aa    MW: 10603.2 Da    PI: 6.4863
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0333781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.7e-12859153
                     NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka 53
                            +ppG+ FhPtde l+++ L++k + k+ e++++i+e+d++k+eP++Lp+++ +
  RcHm_v2.0_Chr1g0333781  8 VPPGYGFHPTDEKLLSD-LEEKNRCKDSEITTIIPEIDVCKHEPHELPANILS 59
                            69*************76.9********99*999***************64433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    
MSCGGFTVPP GYGFHPTDEK LLSDLEEKNR CKDSEITTII PEIDVCKHEP HELPANILSG  60
RRLGRKFAES LKSHVNCISS LFVYSALLWY CCGCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-11NAC family protein