PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0333911
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 178aa    MW: 20656.7 Da    PI: 9.7926
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0333911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.25.2e-2671392128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk......kvka..eekewyfFskrdkkyatgkrknrat 78 
                             p+G+rFhPtd elv +yL+++v+  +   ++ i ++ d y k ePw +        +  +  ee+ +yfF++r+k +++ k+  r++
  RcHm_v2.0_Chr1g0333911   7 PVGYRFHPTDLELVAYYLHNRVAMVDQFRSSPILDCpDFYgKNEPWLIWDmfraqsN--NmkEEETLYFFTHRKKLNPKAKKFDRKV 91 
                             89*******************99988555567888879983569*999532444431..13244466******************** PP

                     NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              sg+W+a+ +++ v + ++++vg+k+ + +  g++p+ ++  W+m+ey++
  RcHm_v2.0_Chr1g0333911  92 GSGTWSAQYSKNVVAA-DDSVVGIKREFRYEGGSDPH-QNGAWLMQEYEI 139
                             *******998666666.999**********9999998.89********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MASGAYPVGY RFHPTDLELV AYYLHNRVAM VDQFRSSPIL DCPDFYGKNE PWLIWDMFRA  60
QSNNMKEEET LYFFTHRKKL NPKAKKFDRK VGSGTWSAQY SKNVVAADDS VVGIKREFRY  120
EGGSDPHQNG AWLMQEYEIT SHNDLVLCTL RKNPRKLPPQ LLLLLRIRAT LLLATKGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-19NAC family protein