PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0335311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 228aa    MW: 25325.2 Da    PI: 6.3683
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0335311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-092369347
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            rWT  Ed+l+ +a  ++  +   +W++Ia++++ g++++++ +++ ++
  RcHm_v2.0_Chr1g0335311 23 RWTRPEDKLFEQALVRFSDDlpdRWERIAEMVP-GKSAEEVLEHYETL 69
                            8*****************99*************.**********9875 PP
2Myb_DNA-binding43.57.5e-14124169247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++WT+ E++l++ + kq+G+g+W++I+r +  +Rt+ q+ s+ qky
  RcHm_v2.0_Chr1g0335311 124 KPWTEIEHKLFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 169
                             58*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MFQEAAPPCW PAGVSQSTSS SARWTRPEDK LFEQALVRFS DDLPDRWERI AEMVPGKSAE  60
EVLEHYETLV HDVVEIDSGR VELPSYADDT VVGWDTSSQI SFDGCKNNNN SGGGGEAAER  120
KKGKPWTEIE HKLFLVGLKQ FGKGDWRSIS RNVVVTRTPT QVASHAQKYF LRQSSGKKER  180
KRSSIHDITS VETNSVPAPA ERKWIPPPPP PPGDQGGSFG FPDFGFPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-66MYB family protein