PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0336291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21562.3 Da    PI: 10.5271
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0336291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81.1e-161150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n+s r++tf kR+n ++KK  ELS+LC++e++ ii+s+
  RcHm_v2.0_Chr1g0336291 11 ITNNSARKTTFKKRKNNMMKKLRELSTLCGIEACAIIYSP 50
                            89************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MARRKQRMAC ITNNSARKTT FKKRKNNMMK KLRELSTLCG IEACAIIYSP FDFEPEVWPS  60
SYAIENALKK LKDMPAIEKS RKMLSQESYL KGMISKAYAK LKRVRRENHE KELKAVMFQS  120
LTKGIPQFQN LNLMDMDDLG RLIIQKLNEI DNKKKSLREE VTESQNQTIQ LTPIVNMVNP  180
NPHQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKQRMACITNNSARKTTFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-39M-type_MADS family protein