PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0338881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 229aa    MW: 25758.5 Da    PI: 11.0122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0338881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.4e-092369347
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            rWT  Ed+l+ +a  ++  +   +W++Ia++++ g++++++ +++ ++
  RcHm_v2.0_Chr1g0338881 23 RWTRPEDKLFEQALVRFSDDlpdRWERIAEMVP-GKSAEEVLEHYETL 69
                            8*****************99*************.**********9875 PP
2Myb_DNA-binding28.53.4e-091341701147
                             HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             l++ + kq+G+g+W++I+r +  +Rt+ q+ s+ qky
  RcHm_v2.0_Chr1g0338881 134 LFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 170
                             79999*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MFQEAAPPCW PAGVSQSTSS SARWTRPEDK LFEQALVRFS DDLPDRWERI AEMVPGKSAE  60
EVLEHYETLV HDVVEIDSGR VELRVTLMTR WSGGTRRVRS LLMVARITII AAAAVRRPRG  120
RRESRGLKLN TKLLFLVGLK QFGKGDWRSI SRNVVVTRTP TQVASHAQKY FLRQSSGKKE  180
RKRSSIHDIT SVETNSVPAP AERKWIPPPP PPPGDQGGSF GFPDFGFPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123RRPRGRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-55MYB family protein