PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0341321

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 500aa MW: 54575.1 Da PI: 5.6945

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0341321	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	74.6	1.4e-23	100	153	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++l Wt+eL +rF+e v+ + G e+A+Pktile+m+v+gLt+e+v+SHLQkYR RcHm_v2.0_Chr1g0341321 100 KAKLIWTQELQARFLESVHFI-GLERAVPKTILEVMNVEGLTRENVASHLQKYRQ 153 6799***************.******************************5 PP
2	Myb_DNA-binding	29.5	1.7e-09	103	152	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 + WT+e++ ++++ v+ G + +ktI + m+ +g+t++++ s++qky+ RcHm_v2.0_Chr1g0341321 103 LIWTQELQARFLESVHFIGLEraVPKTILEVMNvEGLTRENVASHLQKYR 152 56***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MFEHAVVSAD DREHVILKAL KLGAAQYIVK PVCFDDVKNL WKFVVNADRS HKEISFVEEI 60 ESGGEQSSET STSDEDTNGD HEKKNSKRRK STKEGNAPKK AKLIWTQELQ ARFLESVHFI 120 GLERAVPKTI LEVMNVEGLT RENVASHLQK YRQFLRRVAV KISVSKSNIG NKSQTSSSTF 180 GQSQTSIFQQ QPISGQNLSI NLIASSLGRP LFHANHHEAS TTSVPPFGNT SHLYQPNSLS 240 HFQMPQPAFM GYPGSFQPAN YSSVNGSGFQ TNNVQSNWSS ANGLQAQTSP LTNHLYGNYN 300 NDGMSTGFQF GSWNGTMGFL NDSNSLITNN YYGGLPMSGA ASVGLAGFNS NQNPNLMVVK 360 YGWASSTSGL DTNFFGSVLN DIDQSELHQE MNNTSPTGNL MFGNNKFSGV EDASSVGFGG 420 ITTVEAAASS SNVVDVSPNQ NQTGEYFDEL HDILFNDTNL QSVNQEEGKE VVNLYETNAN 480 AVQENASLLK ESNGQACICH

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MFEHAVVSAD DREHVILKAL KLGAAQYIVK PVCFDDVKNL WKFVVNADRS HKEISFVEEI  60
ESGGEQSSET STSDEDTNGD HEKKNSKRRK STKEGNAPKK AKLIWTQELQ ARFLESVHFI  120
GLERAVPKTI LEVMNVEGLT RENVASHLQK YRQFLRRVAV KISVSKSNIG NKSQTSSSTF  180
GQSQTSIFQQ QPISGQNLSI NLIASSLGRP LFHANHHEAS TTSVPPFGNT SHLYQPNSLS  240
HFQMPQPAFM GYPGSFQPAN YSSVNGSGFQ TNNVQSNWSS ANGLQAQTSP LTNHLYGNYN  300
NDGMSTGFQF GSWNGTMGFL NDSNSLITNN YYGGLPMSGA ASVGLAGFNS NQNPNLMVVK  360
YGWASSTSGL DTNFFGSVLN DIDQSELHQE MNNTSPTGNL MFGNNKFSGV EDASSVGFGG  420
ITTVEAAASS SNVVDVSPNQ NQTGEYFDEL HDILFNDTNL QSVNQEEGKE VVNLYETNAN  480
AVQENASLLK ESNGQACICH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	6e-27	ARR-B family protein