PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0342371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 166aa    MW: 18462.3 Da    PI: 7.8685
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0342371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-1531122196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+ +l +s+v+ ++++++p k      +   +s+ ++  +  g++We++++  ++ ++++ +  Wk Fv++n+Lk+gD +vF+l++ 
  RcHm_v2.0_Chr1g0342371  31 FDIILAKSHVNPKCQMSIPSKLH---PLLLSCSVPVV-LTFGGKTWEMTCNTANNAQKFFDRPSWKAFVDDNNLKVGDGCVFELTEC 113
                             6678899************9974...33334775555.6679********99*******************************9866 PP

                             SEE..EEEE CS
                      B3  88 sefelvvkv 96 
                             s+++lv++v
  RcHm_v2.0_Chr1g0342371 114 SSTKLVFRV 122
                             888777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MGDPASQSSS SDPTIELHGD EFWPLSGKPF FDIILAKSHV NPKCQMSIPS KLHPLLLSCS  60
VPVVLTFGGK TWEMTCNTAN NAQKFFDRPS WKAFVDDNNL KVGDGCVFEL TECSSTKLVF  120
RVQILRGEIP AQLLDKDTLV AIKFGRTLFI GGTKSKEPFF VSYRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-10B3 family protein