PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0342401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 145aa    MW: 16384.9 Da    PI: 4.9866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0342401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-11621203796
                             EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             ++ +   +sWe+ +  + +++   v ++ W+ Fv++n Lk+gD ++F+l+g ++++ v+kv
  RcHm_v2.0_Chr1g0342401  62 MVLSFGDKSWEMIY--NETKRLkLVDRQSWRAFVDDNSLKAGDGCIFELTGCDSTKVVFKV 120
                             4566677*******..55554448889*********************9976666555554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MEDSAQSRAT PTIELHGDEF WPLSGKPFFD IIFTKSHVKP LYQMEIPAKL NPVLPAGASF  60
PMVLSFGDKS WEMIYNETKR LKLVDRQSWR AFVDDNSLKA GDGCIFELTG CDSTKVVFKV  120
QILRGDIPAE LVEKYSSETE KPIII