PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0342511
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 122aa    MW: 13851.8 Da    PI: 6.093
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0342511genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-11621103786
                             EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                             ++ +   +sWe+++  + +++   + +  W+ Fv++n Lk+gD ++F+l+g
  RcHm_v2.0_Chr1g0342511  62 MVLNFGDKSWEMTY--NETKRLkLMDRHSWRAFVDDNSLKAGDGCIFELTG 110
                             5677888*******..665554488889********************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MEDSAQSRAT PTIELHGDEF WPLSGKPFFD IIFTKSHVKP LYQMEIPAKL DPVLPAGASV  60
PMVLNFGDKS WEMTYNETKR LKLMDRHSWR AFVDDNSLKA GDGCIFELTG CDTPNPQRRH  120
PS