PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0344211

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 106aa MW: 12388 Da PI: 5.1084

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0344211	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.6e-16	47	106	3	56
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 +R+t+t +ql++L+el++ + p+ e+++e+ +l +++ ++V++WFqN +a+e+ RcHm_v2.0_Chr1g0344211 47 NRWTPTLDQLRILQELYYDkvLKSPTPEQIQEICLHLqqygQIEGKNVFFWFQNLKARER 106 7**************96679**********************************98 PP
2	Wus_type_Homeobox	92.4	4e-30	45	106	2	62
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRer 62 +++RWtPt +Q++iL+ely+ + l++P+ e+iq+i +L++yG+ie+kNVf+WFQN kaRer RcHm_v2.0_Chr1g0344211 45 TNNRWTPTLDQLRILQELYYdKVLKSPTPEQIQEICLHLQQYGQIEGKNVFFWFQNLKARER 106 679*************986889**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSANT PIRPTNNRWT PTLDQLRILQ 60 ELYYDKVLKS PTPEQIQEIC LHLQQYGQIE GKNVFFWFQN LKARER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	6e-26	WOX family protein