PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0345291

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 215aa MW: 23887.8 Da PI: 6.9366

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0345291	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.9	2e-21	54	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++k+ s+ +s++++f RcHm_v2.0_Chr1g0345291 54 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQDVADAVsrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFTSSWVHF 140 8*****************************99998865556667799*********************977999*** PP trihelix 83 dqlea 87 ++++a RcHm_v2.0_Chr1g0345291 141 KRMDA 145 *85 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MASSPPSSPQ DDALIPLQSD PPQAVPLALP APPPPQLTPA SAPPPSSRRL PPPCWSHDET 60 VALIDSYRDK WYSLRRGNLK ATHWQDVADA VSRRCPAASP AKTAVQCRHK MEKLRKRYRT 120 EIQRAKSMPL SRFTSSWVHF KRMDAMEKGP AALKNENSDS PGEDGEDEEN DEEDDQDQEL 180 YEELRYGSNM KSMSKMYRNG VGVGVGGSGF RLGLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-49	Trihelix family protein