PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0346681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21087.6 Da    PI: 10.1474
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0346681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.71.4e-181150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n+s r++tf kR++g++KK +ELS+LC+++++v+i+s+
  RcHm_v2.0_Chr1g0346681 11 ITNNSARKTTFKKRKKGMMKKLSELSTLCGVDACVVIYSP 50
                            89************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MARKKVRMSY ITNNSARKTT FKKRKKGMMK KLSELSTLCG VDACVVIYSP FDSQPEVWPS  60
PSRVKNVLEK FKNMPMIEKS QKMLNQESFL RGMISKTNEQ LKKVRKQNHE KELRHTMFQS  120
LTTGIPQFQN LNLMDMGDLE QLINQKLDEI NSIIENLSEE VIENETKMSK LNNNACEGIH  180
GM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVRMSYITNNSARKTTFKKRK
21732RKTTFKKRKKGMMKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-38M-type_MADS family protein