PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 273aa    MW: 29767 Da    PI: 4.5138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20120170255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrdp++ng   r++lg++ tae+Aa a+++a+ k++g
  RcHm_v2.0_Chr1g0347621 120 HFRGVRRRP-WGKYAAEIRDPKKNG--SRVWLGTYETAEDAALAYDQAAFKMRG 170
                             69*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MFGEIDLESD FALLESIRQY LLDDNFDTTF DLEASSPTAS GSPPPPIYCR SFSFGTLFSA  60
ENWSDLPLKV DSDSDDTVVS DAVPDEVTAS PVKAEPQEVA EVLEESVVVR ETHAPSSGRH  120
FRGVRRRPWG KYAAEIRDPK KNGSRVWLGT YETAEDAALA YDQAAFKMRG SKAKLNFPHL  180
IGSEGSQPVR ITPKRRSPES YSSSSSSTSE SGSPKPKRPN LGVGPAAAKA EFCGSIRVEM  240
VETSQLAVVD QSLNDFNTTV VSMPQEVMIS GYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-37ERF family protein