PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 213aa    MW: 23776.6 Da    PI: 7.0627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18113163255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrdp +ng  +r++lg++ t+e+A  a+++a+ kl+g
  RcHm_v2.0_Chr1g0347631 113 HFRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 163
                             69*******.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MYGQTTLESV DSDLALLESI RQHLLGDHME PPATIFGGDV DDIIPLFFPS STAASTCLSG  60
LFTTENWWES ALKPEDSESE AVSTPEEEEV KLRKQAQNAS VKRDVHAPRV ERHFRGVRRR  120
PWGKYAAEIR DPAKNGARVW LGTYETPEDA GLAYDRAAFK LRGCKAKLNF PHLIGSNSVE  180
PVRVTPKRRR SPELSSTSLS ASEDNESPKA KRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ERF family protein