PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 239aa    MW: 26514.4 Da    PI: 5.6486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1786136255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrdp++ng   r++lg++ tae A  a+++a+ k++g
  RcHm_v2.0_Chr1g0347641  86 HFRGVRRRP-WGKYAAEIRDPKKNG--MRVWLGTYETAEHAGLAYDRAAFKMRG 136
                             69*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MSIETESFSN SDWALLESIR QHLLDDDFDT QLGFFADSPA QRTSSSNSTE ISNSDAEIVG  60
RNQAFTSEFE EVAAEREHHA PSAPRHFRGV RRRPWGKYAA EIRDPKKNGM RVWLGTYETA  120
EHAGLAYDRA AFKMRGSKAK LNFPHLIGAH DMEVGRVFPK RASPEPASPS STTSSEDGSP  180
KPKRRRGGGD SAAAKAKLDE AAREFQLFQV DSFTFGNELL VEDMVLLSPS ECSDILSFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-38ERF family protein