PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7786.05 Da    PI: 6.5188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.47.8e-081232042
                            HHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF 20 ilKKAeELSvLCdaevaviifss 42
                            ++KK +EL +LC+++++ i++ss
  RcHm_v2.0_Chr1g0347651  1 MMKKLSELNTLCGIDACAIVYSS 23
                            69*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    
MMKKLSELNT LCGIDACAIV YSSFDSQPEV WPSTSSVEKV LKQFKNMLMT EKSRKMLSQE  60
SYMRGDDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-21M-type_MADS family protein