PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 217aa    MW: 23598 Da    PI: 6.8753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1885135255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrdp++ng  +r++lg++  ae+A  a+++a+ k++g
  RcHm_v2.0_Chr1g0347661  85 HFRGVRRRP-WGKYAAEIRDPKKNG--TRVWLGTYEKAEDAGLAYDRAAFKMRG 135
                             69*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MSTETSFSNS DWALLESIRQ HLLEDDFDTQ SAFSTDSPAQ NTSSSNCTEI SNSDAEIVEQ  60
NQAFTSEFEA EVAAREHHTP SGQRHFRGVR RRPWGKYAAE IRDPKKNGTR VWLGTYEKAE  120
DAGLAYDRAA FKMRGSKAKL NFPHLIGMHD VEVGRVLPKR ASPEPSSPSS TTSTEDGSPK  180
PKGWSGLGCG GSPVGGSCSR VSCVPSGLIH ILQRTIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-38ERF family protein