PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0347671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 204aa    MW: 22842.3 Da    PI: 7.7275
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0347671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1793142355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GVr+++ +g++ AeIrdp++ng  +r++lg++  ae+A  a+++a+ k++g
  RcHm_v2.0_Chr1g0347671  93 FRGVRRRP-WGKYSAEIRDPKKNG--TRVWLGTYERAEDAGLAYDRAAFKMRG 142
                             8*******.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSTETESFSN SNWALLESIR QHLLDDDFEF DTQSAFFANS PAQSTSSSSR IEISSNDLEI  60
VEEPNQVFTC KLEVEVAVAE REHNTPSRER HNFRGVRRRP WGKYSAEIRD PKKNGTRVWL  120
GTYERAEDAG LAYDRAAFKM RGSKAKLNFP HLIGTHDMEV GRVLPKRASP ELSSPSSEDG  180
SPKPKRRRSG VDSTAAKAKL GEAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ERF family protein