PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0348681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 229aa    MW: 25676.2 Da    PI: 6.2773
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0348681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18137171135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++C + kTp+WR gp+g+ktLCnaCG++y++ +l
  RcHm_v2.0_Chr1g0348681 137 CTHCASEKTPQWRTGPSGPKTLCNACGVRYKSGRL 171
                             *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MEDMYGLSSS SSSAQPHDYF PIDDLLDLSN DEIFSNSSST TSSTDSHHHH YYTPPPPPPA  60
LFHPPSTTDF TNALCLPSED VAELEWLSRF VDDSFSDFPA PPELSGSMSL PNDKSFSNRG  120
HAKPIRQAEG SGSIRRCTHC ASEKTPQWRT GPSGPKTLCN ACGVRYKSGR LVPEYRPAAS  180
PTFVLTQHSN SHRKVMELRR QKEVSSQQES EEEEQQRRFY LHPNGFRVC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-57GATA family protein