PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0349391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 221aa    MW: 24515 Da    PI: 8.1575
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0349391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY240.82.9e-74151842170
                   YABBY   2 dvfssseqvCyvqCnfCntila.vsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnv 86 
                             d+ s s+q+Cyv+CnfC+t+la vsvP +slfk+vtvrCGhC++llsvn++     + a + hl++s+  + l +++ ++    sn+
  RcHm_v2.0_Chr1g0349391  15 DHLSPSDQLCYVHCNFCDTVLAvVSVPCSSLFKTVTVRCGHCSNLLSVNMRGLLLpAAANQLHLGHSFFTQNLPQEEIRNAP--SNT 99 
                             78899****************7369**********************99998775144445578888776644444333333..333 PP

                   YABBY  87 ekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              +++ ++  ++s++      ee+p++pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  RcHm_v2.0_Chr1g0349391 100 FSNQPNMMMNESFMPMIRGVEEIPKPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 184
                             3333333333343334678899***99989*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSAAASSNTV FSSPDHLSPS DQLCYVHCNF CDTVLAVVSV PCSSLFKTVT VRCGHCSNLL  60
SVNMRGLLLP AAANQLHLGH SFFTQNLPQE EIRNAPSNTF SNQPNMMMNE SFMPMIRGVE  120
EIPKPPPVVN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI  180
HFGLMPDQPV KKANIRQDGE DMLIKDNGFF SAPANLGVSP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.14e-80YABBY family protein