PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0349631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 237aa    MW: 25976.9 Da    PI: 5.8163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0349631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20102153156
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             s+y+GVr+++  g+WvAeIrd       r  r++lg+f taeeAa+a++ a+ +++ge
  RcHm_v2.0_Chr1g0349631 102 SKYRGVRQRP-GGKWVAEIRDsR-----RaVRVWLGTFQTAEEAARAYDTAAIEFRGE 153
                             89********.9*********33.....47*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MESSGTKMPS HSGGLPKEQE HAIIVSALKQ VVRGGTTQPP PPQLHYASSS LPPTGGTDQV  60
VIPFSDCDAC QVCNMKMDDC LGYGLFRPSE QDEGKGKKMK TSKYRGVRQR PGGKWVAEIR  120
DSRRAVRVWL GTFQTAEEAA RAYDTAAIEF RGERAKLNFP LSSEASTTTT GAALTRQSME  180
TGEVNQVTAS SVKSANQEEG QSSDVKDEDI DRFIWEMLKN DDKNEDLSTR VNSNLLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-23ERF family protein