PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0350701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 214aa    MW: 23435.9 Da    PI: 8.2944
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0350701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-38191191100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdPvyG+v++i++lqqq
  RcHm_v2.0_Chr1g0350701  19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQQ 105
                             7***********************9989*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             + +l++ela+++++
  RcHm_v2.0_Chr1g0350701 106 VVNLQSELAYVQAR 119
                             *********99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MSRGSTNVEN NGGGSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN  60
ASKLLLRIPA HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ SELAYVQARL  120
ATFQRLPPPP PPPQPQSLHS LANVVASSSD LVPISNLMMH FDPLQTQQCA GQEMTSLFNP  180
LDQELIDGED LQILAREFVS RYLPGVRFRP PGPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-66LBD family protein