PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0350711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 249aa MW: 25483.8 Da PI: 7.8193

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0350711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.2e-40	31	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r+da+ ++++eA+ar++dPvyG+v++i++lqqq RcHm_v2.0_Chr1g0350711 31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPAHKRPDAVLTVCFEAQARLKDPVYGCVAHIFALQQQ 117 7*********************9989******************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+ae+++l+++ RcHm_v2.0_Chr1g0350711 118 VVNLQAEISYLQAH 131 *******99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MNATTNPTGG CSGGGGGSSS GGSAGGGNAG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH 60 FAAVHKVFGA SNVSKLLHHI PAHKRPDAVL TVCFEAQARL KDPVYGCVAH IFALQQQVVN 120 LQAEISYLQA HLATMELPSP PPPPPPLIAQ PPLSIADLPS APMPATYDLS SLFEPMVQPT 180 AWVMQQRALL HNQHHQFASG SGGSSSSGGG GGGSGDLQAL ARELLHRHTG SPSGSVPCSE 240 ASPSQSMSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	5e-78	LBD family protein