PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0351671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28181 Da    PI: 9.5035
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0351671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF101.82.5e-32959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss
  RcHm_v2.0_Chr1g0351671  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFSS 59
                            79***********************************************96 PP
2K-box98.41e-3281171999
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                              +++++e +++e++kL++++++L r+qRhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+e+l+kke++l + n +Lr
  RcHm_v2.0_Chr1g0351671  81 STKRETECWYEEVSKLRAKYDSLLRTQRHLLGEDLGPLSVKELQNLEKQLEGALTQARQRKTQIMIEQMEHLRKKERQLGDLNLQLR 167
                             678899********************************************************************************* PP

                   K-box  96 kkle 99 
                              kl+
  RcHm_v2.0_Chr1g0351671 168 DKLQ 171
                             *997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFSSA  60
GSMTQTLERY QRSSFSPHDN STKRETECWY EEVSKLRAKY DSLLRTQRHL LGEDLGPLSV  120
KELQNLEKQL EGALTQARQR KTQIMIEQME HLRKKERQLG DLNLQLRDKL QKEGENLKAI  180
QDFWSSNSAA TGNSNFLHSS QVSHIDPAPE PILQIGYHHY VAAESADVPK SMAMAAETNF  240
IQGWVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-105MIKC_MADS family protein