PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0351691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24719.1 Da    PI: 8.9288
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0351691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.4e-291059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rien + rqvtfskRr g+lKKA+ELS+LCdaeva+iifs++gklye++s
  RcHm_v2.0_Chr1g0351691 10 RIENATSRQVTFSKRRSGLLKKAFELSILCDAEVALIIFSPRGKLYEFAS 59
                            8***********************************************86 PP
2K-box79.67.8e-2777173399
                   K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                             ++++ks++++++ +l++e++ + k+ie L+ ++R+llGe+L+ +s+ eLq++eqqLe+s+++iR++K ++++eqie+l++ke+ l  
  RcHm_v2.0_Chr1g0351691  77 QANNKSVASEQNVQLKHEATSMMKQIEHLEVSKRKLLGESLGLCSIDELQEIEQQLERSVNSIRARKAQVYKEQIEQLREKERVLTA 163
                             34455599999999************************************************************************* PP

                   K-box  90 enkaLrkkle 99 
                             en++L++k e
  RcHm_v2.0_Chr1g0351691 164 ENQRLNEKCE 173
                             ******9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSILCD AEVALIIFSP RGKLYEFASN  60
SMQTTIERYE KHTKDNQANN KSVASEQNVQ LKHEATSMMK QIEHLEVSKR KLLGESLGLC  120
SIDELQEIEQ QLERSVNSIR ARKAQVYKEQ IEQLREKERV LTAENQRLNE KCEAMQPRQP  180
VSEQRENLAC PESSPSSDVE TELFIGLPER RSKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159LREKER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-81MIKC_MADS family protein