PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0351961

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 182aa MW: 20659.2 Da PI: 6.8941

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0351961	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.5	8.9e-12	49	144	2	85
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangL 74 +k+lt sd ++++rl +pk+ +++h ++++ +k++t++d++ + ++++ ++s++yv+ ++W e vk +L RcHm_v2.0_Chr1g0351961 49 KKKLTLSDLGNLSRLLVPKEMVKNHvlphvngdfvqRLESKAGKQVTVKDSDKeteHQLTFRY--LRSSKSYVFNGNWMEIVKGRDL 133 589999**********************999999555557788999997666456666666..****************** PP -TT-EEEEEE- CS B3 75 kegDfvvFkld 85 k D + ++ d RcHm_v2.0_Chr1g0351961 134 KKDDEIGLYWD 144 *98888854 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MEPKTKSDPV VECDDAQNLH TLTEGSARPS AHNHIDEQVA RDPALYKIKK KLTLSDLGNL 60 SRLLVPKEMV KNHVLPHVNG DFVQRLESKA GKQVTVKDSD KETEHQLTFR YLRSSKSYVF 120 NGNWMEIVKG RDLKKDDEIG LYWDTLNSNF HFSLLKLASQ ESQAADEVTR AWSSTMTSSL 180 ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	1e-13	B3 family protein