PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0352151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 117aa MW: 13571.5 Da PI: 9.7949

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0352151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	64.3	2.3e-20	64	113	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+ Wt eLH+rF++av+ + G++ A Pk+i +lm+v+gL + +v SHLQ RcHm_v2.0_Chr1g0352151 64 KRRVIWTDELHHRFLQAVKLI-GIDGARPKKIIQLMNVPGLMRRNVSSHLQ 113 689**************99.*************************** PP
2	Myb_DNA-binding	31.7	3.5e-10	68	114	3	46
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT e++ ++++avk+ G + ++k+I + m+ g+ + ++ s++q RcHm_v2.0_Chr1g0352151 68 IWTDELHHRFLQAVKLIGIDgaRPKKIIQLMNvPGLMRRNVSSHLQV 114 6********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence
MDSLKNLWQF AFKNNRNVVI DITKEESNTH VESQAKIPNS ERERSEGMDN YVEKDSNCST 60 AFTKRRVIWT DELHHRFLQA VKLIGIDGAR PKKIIQLMNV PGLMRRNVSS HLQVCSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-18	ARR-B family protein