PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0354061
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 329aa    MW: 36774.1 Da    PI: 6.5127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0354061genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT++Ede+lv+++++  g+ +W+t +++ g+ R++k+c++rw +yl
  RcHm_v2.0_Chr1g0354061 14 RGPWTPDEDEILVNYINKNKGHgSWRTLPHHAGLLRCGKSCRLRWTNYL 62
                            89*****************9999**********99************97 PP
2Myb_DNA-binding513.4e-1668113148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T eE++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l
  RcHm_v2.0_Chr1g0354061  68 RGPFTDEEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                             89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MGRTPCCDKK GLKRGPWTPD EDEILVNYIN KNKGHGSWRT LPHHAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTDEEEKLII QLHGMLGNRW AAIASQLPGR TDNEIKNLWN THLRKRLIRM  120
GVNPQNHEPF TSDGSTSKAS ASIATRHMAQ WESARLEAEA RLSRESSNVS TPLLDKSDSD  180
YFLRLWYSEV GESFRKFPTA GKTPSDSPIS EASSSGKCGS ISAVTTEIGH CLMGSSTIAG  240
NQDEDIEYKV FKSITGEDMV YRIYKSNTEN VTRGSDSSSS NKLDDSSESA MDLLLDYPIN  300
NDMSFLEDDM NDYATSTSAK LENAFICPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111MYB family protein