PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0356381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 133aa    MW: 15757.1 Da    PI: 7.3705
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0356381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-182741999
                            -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                      B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                            p  f+++++g+       +l+ ++g+ W+vkl  + k +  ++ kGWk+Fvk+n L+egDf+vF +dg+s f   v++++k
  RcHm_v2.0_Chr1g0356381  2 PTAFVNDFNGP----ALCKLRGPNGKCWDVKL--EEKNNDLFFHKGWKKFVKDNYLEEGDFLVFNYDGNSLF--SVTIYDK 74
                            55666555544....4579*************..99999*****************************9999..8888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MPTAFVNDFN GPALCKLRGP NGKCWDVKLE EKNNDLFFHK GWKKFVKDNY LEEGDFLVFN  60
YDGNSLFSVT IYDKSACELM DMEEAKRKRS TDCFVGQMRD YVMPGETRLR IIEFKSEHLC  120
FKRTMETHRL YHC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.17e-16B3 family protein