PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0359121
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 112aa    MW: 13410.1 Da    PI: 10.3348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0359121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-073170445
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                            ++++E++l+ +  k+ G + W +Ia +++ gR ++++  +w+
  RcHm_v2.0_Chr1g0359121 31 MSEQEEDLICRMYKLVGDR-WGLIAGRLP-GRKAEEIERFWL 70
                            799**************99.*********.***********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MDVKRRRKQA KTSSSSFSEE VSSIEWEFIN MSEQEEDLIC RMYKLVGDRW GLIAGRLPGR  60
KAEEIERFWL MRHGEVFASR RRTEQEKYQQ PQQLSNSNNM NKSTKNSRRY NS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.15e-28MYB_related family protein