PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0360021
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 211aa    MW: 23404 Da    PI: 6.6718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0360021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-184999155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  RcHm_v2.0_Chr1g0360021 49 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 99
                            68*****887.**********843...6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTLPANAFST YMEQPPDTED DLSTPTTTTA AATITQNHEN QQRSGTRHPV YRGVRKRRWG  60
KWVSEIREPR KKSRIWLGSF PVPEMAAKAY DVAAYCLKGR KAQLNFPDEV EHLPRPSTST  120
ARDIQAAAAK AAQTMKSSST ARSTDQDHHR DVLDGGGVDD FWGEIELPEL MNSGTCYSNS  180
CGWSTFTGET VKRSTFTGET ALTWPEGEAC L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-54ERF family protein