PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0360601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 224aa    MW: 25275 Da    PI: 9.1032
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0360601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.45.7e-142384257
                            T--SS--HHHHHHHHHH.HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeel.Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+ +t++q+++L+el ++k  r p+ e+++++  +l    +++ ++V++WF N+Ra+ek+
  RcHm_v2.0_Chr1g0360601 23 STRWIPTTDQIRILKELdYNKgVRSPTVEQIQRIYLHLrwygSVESKNVYYWFRNQRAREKQ 84
                            58************99857778**************************************97 PP
2Wus_type_Homeobox91.21e-292286265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeel.yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW Pt++Qi+iL+el y++G+r+P+ e+iqri  +L+ yG +e+kNV+yWF N++aRe+qk+
  RcHm_v2.0_Chr1g0360601 22 SSTRWIPTTDQIRILKELdYNKGVRSPTVEQIQRIYLHLRWYGSVESKNVYYWFRNQRAREKQKK 86
                            689***************999******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MEPQTRQPTE DGGSNKVAGR KSSTRWIPTT DQIRILKELD YNKGVRSPTV EQIQRIYLHL  60
RWYGSVESKN VYYWFRNQRA REKQKKSSTS HVHVPMQKSG LVSNGNGTNW KPEDQYINFG  120
SSASASVSSA DVMIAFKGQM GNYGGYGSMN TEIETLPLFP MHNEDIFGNM KTSSEGGGGY  180
SYYSCGWGGY NGDSHISLEL SLNSYDSTLF SRERVFSVRE ETKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-26WOX family protein