PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0360751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 243aa    MW: 28155 Da    PI: 4.9206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0360751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.9e-193993256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             ++ +f++eq++ Le+ Fe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  RcHm_v2.0_Chr1g0360751 39 NNKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 93
                            56788*************************************************9 PP
2HD-ZIP_I/II122.52e-3940131293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             +k+r+s+eq+++LE+ Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L 
  RcHm_v2.0_Chr1g0360751  40 NKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASRFEALKKEKQALV 126
                             79************************************************************************************* PP

             HD-ZIP_I/II  89 eelke 93 
                             ++l++
  RcHm_v2.0_Chr1g0360751 127 TQLQK 131
                             *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MLEVDRVGYS PSPEEAEAFS YMNDSLGAGS SLKKNRSKNN KKRFSDEQIR SLESIFESES  60
RLEPRKKLQL AKELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILRANYNN LASRFEALKK  120
EKQALVTQLQ KLNDKMQRPK EERNNSIDGE SDNGDDATRS ESEGKPNYQM SLEKSEHRLR  180
VMSDDDSSIK AEYFGLEEEP NLVNFVESAD GSLTSPEDWG RLNSDGGLFD QSTSDYQWWD  240
FWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13339KKNRSKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-71HD-ZIP family protein