PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 464aa    MW: 52113 Da    PI: 5.0237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.83.6e-35111491128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk........kvkaeekewyfFskrdkkya....tgkrk 74 
                             lp+GfrF+P++eel+++yL kk +++k ++ ev i+e++++++eP+dLp+          ++ + ew+fFs+r  k++    +g+r 
  RcHm_v2.0_Chr1g0361391  11 LPKGFRFQPSEEELLSHYLVKKNHQRKDPEIEViIPEINVCDHEPRDLPAlvftrakfLPASPNMEWHFFSRRVFKHSesksKGTRI 97 
                             799*******************999996655665***************6567655432222556*****988665554444899** PP

                     NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             nratk+g Wk++g dk++++  +++++g k++L+fy    pk ++tdWv+hey l
  RcHm_v2.0_Chr1g0361391  98 NRATKEGSWKKQGDDKRITRPySDKQIGGKRILTFY---LPKKQRTDWVIHEYYL 149
                             *******************9988999**********...677789********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MMMMSSDRIT LPKGFRFQPS EEELLSHYLV KKNHQRKDPE IEVIIPEINV CDHEPRDLPA  60
LVFTRAKFLP ASPNMEWHFF SRRVFKHSES KSKGTRINRA TKEGSWKKQG DDKRITRPYS  120
DKQIGGKRIL TFYLPKKQRT DWVIHEYYLT KPNSDEQIGD FVLCRLKHKS GKSDHDQQDD  180
PLCDGGEPNS GSCSMVSNVE DQGSKELGTV LPIPNGNNDE AEHGGGSCSM AFDVENQASK  240
QLENDLSIPN GNDNEAEHGS SCCPITSAFD NEAAADGMLT EAEEDLAFKE LEEFYGNEQD  300
VRGSQTYPCY IDKNDLSISV KGQPADNCNS SDSAMVEEPL DEPGNLALPL HPPPSPQLQS  360
PIYTKPGTTN VQNDESRKRK YSFGDNDPFL TKKNHIDEVD SNSSSNSENQ AADAIPEVRI  420
SMLLNPFLFE FLNMQQHKKC IQTQLFLSVI VNSGIFSTRR KSGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.16e-26NAC family protein