PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 218aa    MW: 24675.6 Da    PI: 7.0178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.56.4e-2027257126
                     NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                             ew+fF++++ ky++++r+nr+tk+  Wk tgk++ ++++ +++++g k+tL+fy grapk++kt+Wv+h  
  RcHm_v2.0_Chr1g0361411   2 EWFFFTRKAYKYNKSSRSNRSTKKIHWKITGKERGITARrSKSVIGKKRTLTFYLGRAPKSKKTSWVIHGH 72 
                             8************************************99566779***********************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MEWFFFTRKA YKYNKSSRSN RSTKKIHWKI TGKERGITAR RSKSVIGKKR TLTFYLGRAP  60
KSKKTSWVIH GHYLPGDGVA SYPKQAQGDF VICLLKIRSD KKDSPVSNEG EPRSTSVSEM  120
NQEGNEKLLF HQPQPLDDCC SSAMQSPVSQ ELEAVLQTNV TNDDCNELQS PFGDSDSYLL  180
DGNEVSTCDE DETVYDVFPQ LRDLPEQNLD SLFGAHQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.13e-17NAC family protein