PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 215aa    MW: 24505.6 Da    PI: 6.1454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.52.2e-35101521128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya..t 70 
                             lp+G+rF P+deelv++yL+kk ++k+ e++ +i+ ++++++ P+dL +               ++++ + e+yf+s+r  k++  +
  RcHm_v2.0_Chr1g0361441  10 LPKGLRFLPSDEELVSDYLEKKNQQKDPEIKAIISVINVCEHGPSDLAAlvprvkfldgeweftMADSPDMELYFYSPRVFKHStsK 96 
                             799***************************889**************85689899999999775444466699******88887225 PP

                     NAM  71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++r+nr+t++gyWk++gkd++++++ ++e++g k++L+fy  r++  +ktdWv+hey l
  RcHm_v2.0_Chr1g0361441  97 STRSNRKTEEGYWKKQGKDRRITRArSDEQIGGKRILTFYL-RDK--QKTDWVIHEYYL 152
                             78*********************9867889**********4.333..58********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MMMSSGCITL PKGLRFLPSD EELVSDYLEK KNQQKDPEIK AIISVINVCE HGPSDLAALV  60
PRVKFLDGEW EFTMADSPDM ELYFYSPRVF KHSTSKSTRS NRKTEEGYWK KQGKDRRITR  120
ARSDEQIGGK RILTFYLRDK QKTDWVIHEY YLTKANSDEQ IGDFVLCRLK NKSGKSDHDQ  180
QDDPLCDGGE PNSGSCSMVS NVEDQGSKEL GTYGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.13e-23NAC family protein