PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 573aa    MW: 64418.2 Da    PI: 4.6174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-31371901128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatg 71 
                             lp+GfrF+P+deel+++yL+kk  ++k  ++e +i+e++++++eP+dLp+               ++++ + e yfFs+   k++t+
  RcHm_v2.0_Chr1g0361471  37 LPKGFRFQPSDEELLSHYLEKKNYQSKdPQIEAIIPEINVCDHEPRDLPAlvfkraefldkewftMADSPDMERYFFSPLVFKNSTS 123
                             799******************9766653777777***************6689999999888775444466699***9987777643 PP

                     NAM  72 k............rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             k            + nratk+g Wk++g dk++++  +++++g k++L+fy  r++  ++tdWv+hey l
  RcHm_v2.0_Chr1g0361471 124 KskskgkgkgkstQINRATKEGSWKKQGGDKRITRPySDKQIGGKRILTFYL-RDK--QRTDWVIHEYYL 190
                             323334444555588899****************9988999**********4.333..48********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MYHLTLSSAL PQPKTTHSLF REREREMMMI SSGRITLPKG FRFQPSDEEL LSHYLEKKNY  60
QSKDPQIEAI IPEINVCDHE PRDLPALVFK RAEFLDKEWF TMADSPDMER YFFSPLVFKN  120
STSKSKSKGK GKGKSTQINR ATKEGSWKKQ GGDKRITRPY SDKQIGGKRI LTFYLRDKQR  180
TDWVIHEYYL TKANSDEQVG DFVLCRLKNK SGKSDHDQQD DPLCDGGEPN SGSCSMVSNV  240
EHQGSKELGT VLPISNINDD EAERGGGSCS MAFNVENQPS KQLENVLPIP NRSDGDTEHG  300
GGSCHIASGF ENEAAEFGLL TEEEINQTFK ELIDAVREYD GNEQEVRGSQ TDFCYIDQND  360
HWISVEDQPA DSCISSDSIV VEKPLDEPGN LALHRHPLPP PNMVEKPLDE PRNLALPLHP  420
PPPPNMFEKP LDEPGNLGLP LHPPPSPQLQ SPIYTKLGTT NVQNDESRKR KYSFGDNDSF  480
LTKKNHIDEV DSNSSSNSEN QAADAIPEGY SQPGENLESE SFQSQELPSI NRVPGDFPHD  540
NNLIEWGKFS PITEGFDSSL EFSDTFIDCY PCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.28e-24NAC family protein