PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 244aa    MW: 27625.9 Da    PI: 7.0063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.81e-232310050126
                     NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                             +++a++ ew+fF++++ ky++++r+nr tk+gyWk tg+++ ++++ +++++g k+tL+fy+grapk++kt+Wv+h  
  RcHm_v2.0_Chr1g0361501  23 ETEAHDMEWFFFTRKAYKYNKSSRSNRRTKKGYWKITGNERGITARrSKSVIGKKRTLTFYQGRAPKSKKTSWVIHGH 100
                             4566788*************************************99566779***********************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MNRVGSDFVV FVCWVRAALL GTETEAHDME WFFFTRKAYK YNKSSRSNRR TKKGYWKITG  60
NERGITARRS KSVIGKKRTL TFYQGRAPKS KKTSWVIHGH YLPGDGVASY PKQAQGDFVI  120
CLLKIRSDKK DSPVSNEGEA RSTSVSEMNQ EGNEKLLFHQ PQPLDDCCSS ALQSPVSQEL  180
EAVLQTNVTN DDCNELQSPF GDSYSYLLDG NEVSTCDEDE TVYDVFPKLR DLPEQNLDSL  240
FGPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.15e-25NAC family protein