PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 250aa    MW: 28934.7 Da    PI: 8.4348
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.52.5e-40101571128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya..t 70 
                             lp+GfrF+P+deel+++yLkkk ++k+ e+e +i+e++++++eP+dLp+               ++++ + ewyfFs+r  k++  +
  RcHm_v2.0_Chr1g0361531  10 LPKGFRFRPSDEELLSHYLKKKNQRKDPEVEAIIPEINVCEHEPRDLPAlvftravfldrewftMADSPDMEWYFFSPRVFKHSksK 96 
                             799***************************999***************66899999999998855555677*******987766336 PP

                     NAM  71 gkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                             ++r+nr+t++gyWk++gkd++++++  +++++g k++L+fy+    ++ +ktdWv+hey l
  RcHm_v2.0_Chr1g0361531  97 STRSNRTTEDGYWKKQGKDRRIMTQarSDKQIGGKRILTFYQTdGVQRKQKTDWVIHEYYL 157
                             88*********************99888889**********763455669*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MMMSSGRITL PKGFRFRPSD EELLSHYLKK KNQRKDPEVE AIIPEINVCE HEPRDLPALV  60
FTRAVFLDRE WFTMADSPDM EWYFFSPRVF KHSKSKSTRS NRTTEDGYWK KQGKDRRIMT  120
QARSDKQIGG KRILTFYQTD GVQRKQKTDW VIHEYYLTKA DSNEQIGDFV LCRLKKKSDK  180
SDHDEQEGPF YGGGGYSMAF INVENQASKE LGNVLSISVE GQPDSCNSSD SNMVEEVRTN  240
ISISAMKFLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-29NAC family protein