PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 489aa    MW: 55716.3 Da    PI: 5.4795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.42.7e-44131413128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             +GfrF Pt+eelv++yLkkk++g +  e++++i+e+d++k+eP +Lp+ + + ++ ew+fF++++ ky++++r+nr+tk+gyWk +g
  RcHm_v2.0_Chr1g0361551  13 VGFRFLPTEEELVNHYLKKKIHGGNdSEINQIIPEIDLCKYEPAELPALLGTeTDMEWFFFTRKAYKYNKSSRSNRSTKKGYWKISG 99 
                             8********************99985677778***************644441566******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             k++ ++++ +++++g+kktL+fy+gr pk++kt+Wv+hey l
  RcHm_v2.0_Chr1g0361551 100 KERGIKARrSKAVIGMKKTLTFYQGRVPKSKKTSWVIHEYYL 141
                             ******98566779**************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MSRDKTTPLS VRVGFRFLPT EEELVNHYLK KKIHGGNDSE INQIIPEIDL CKYEPAELPA  60
LLGTETDMEW FFFTRKAYKY NKSSRSNRST KKGYWKISGK ERGIKARRSK AVIGMKKTLT  120
FYQGRVPKSK KTSWVIHEYY LPGNGVIQKQ AQGDFVICRL KIRSDKKDSL VRNEGQSGSA  180
SVSEMNQEGN EELLFHQPQP QDCCSSALRS PVSQELEAVL QTNNTNDDCN ELQSPFGDSD  240
SCHQDGNEVS TCDEYETLYD VFPQLRDPPE ENLDSLFGPH QPQDYCPSIL QSPIYTKLWY  300
VPHPLQPQDY CPSILQSPIY TKLGDVPHPL QPQDYEPSKL QSPIYTKLGN VPDANLYCGE  360
CNNWQSAIMK KISTDEVHIP FRQIMSNSEN QATDYRILEV HHPQIKENLE SVVYPFQPQD  420
STLQPLMYTK FGDALHNIEC NELQSSFGDT DSSLTRFLNT NFAYQDGFKE SNLPNSLGMV  480
YHGDSGVSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.13e-37NAC family protein