PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361601

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 399aa MW: 45497.8 Da PI: 5.4823

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361601	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.2	1.5e-10	10	56	3	49
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 + +rF+Pt +el++++L+kk + k+ + ++i+ +d++k+eP++Lp RcHm_v2.0_Chr1g0361601 10 REYRFRPTKKELLCDHLEKKNQCKDSQSISIIPVIDLCKHEPRELPG 56 558********************999899************94 PP
2	NAM	72.8	8.7e-23	113	188	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +wyfF++rd kya+++r+nr+t +g+Wk tgk +++++ +++++g k++L+f k +pk++kt Wv+hey l RcHm_v2.0_Chr1g0361601 113 SQGKWYFFAPRDYKYANSTRSNRTTGEGFWKPTGKVRDIKAPgSKAVIGRKRILTFQKDGEPKPQKTGWVIHEYYL 188 3459***********************************9666779************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MSCEIFPIPR EYRFRPTKKE LLCDHLEKKN QCKDSQSISI IPVIDLCKHE PRELPGDPSP 60 EPEHHQFQLL LVIQSCVLCC VFAGLAFTGQ ENLGRKLFFF FFFWFTRAES WDSQGKWYFF 120 APRDYKYANS TRSNRTTGEG FWKPTGKVRD IKAPGSKAVI GRKRILTFQK DGEPKPQKTG 180 WVIHEYYLIE AQSDRPKQIG DFVVCCLKYK SDNSDHDEDA PFCNPGSGSC SMASSVANQA 240 EENLASNEQF NGTDYEAETG GGRITEAEEH LAYKKLRDEL RIPIGNQNEF QGSQTDPCNL 300 WTSVEGQANR SNSSHMIEER LNDPEMHELH QSPMYTTNVQ NDGCHKRKYP FEDNDSSLTN 360 KKNNISTNDG DELLVSNTTS NSENQAADVI LEVRICILF

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MSCEIFPIPR EYRFRPTKKE LLCDHLEKKN QCKDSQSISI IPVIDLCKHE PRELPGDPSP  60
EPEHHQFQLL LVIQSCVLCC VFAGLAFTGQ ENLGRKLFFF FFFWFTRAES WDSQGKWYFF  120
APRDYKYANS TRSNRTTGEG FWKPTGKVRD IKAPGSKAVI GRKRILTFQK DGEPKPQKTG  180
WVIHEYYLIE AQSDRPKQIG DFVVCCLKYK SDNSDHDEDA PFCNPGSGSC SMASSVANQA  240
EENLASNEQF NGTDYEAETG GGRITEAEEH LAYKKLRDEL RIPIGNQNEF QGSQTDPCNL  300
WTSVEGQANR SNSSHMIEER LNDPEMHELH QSPMYTTNVQ NDGCHKRKYP FEDNDSSLTN  360
KKNNISTNDG DELLVSNTTS NSENQAADVI LEVRICILF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	3e-26	NAC family protein