PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361611

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 352aa MW: 40353.5 Da PI: 6.7781

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.3	1.4e-10	8	55	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 +ppG+r +Ptdeel+++ L+k+ +gk+ ++ ++i+e++++k+eP++Lp RcHm_v2.0_Chr1g0361611 8 VPPGYRLRPTDEELLSD-LEKQNQGKDSQIMSIIPEIEVCKHEPRELPG 55 69***********66.9*******99*************94 PP
2	NAM	65.3	1.8e-20	114	189	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 + +wyfF++r+ ky++++r+nr+t +g Wk t kd+++++ +++++g k+tL+fy k k++kt Wv+hey l RcHm_v2.0_Chr1g0361611 114 QGKWYFFAPREYKYPKSNRSNRTTGEGSWKVTSKDRDIKAPgTKAVIGRKRTLTFYiKRGVLKPQKTGWVIHEYYL 189 559***********************************9667779*****544556889*******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MSWGLFTVPP GYRLRPTDEE LLSDLEKQNQ GKDSQIMSII PEIEVCKHEP RELPGDPSPE 60 PEHHQFQLLL LMIQSCLLCC VFAELAFRRR QNLGRKLFFF FFFWFTRAES WYSQGKWYFF 120 APREYKYPKS NRSNRTTGEG SWKVTSKDRD IKAPGTKAVI GRKRTLTFYI KRGVLKPQKT 180 GWVIHEYYLT RANSDEQIGD FVVCCLKYKS DNSDHHEDAP FFYRGSGSGS CSMVSNVANQ 240 AEENLASNEQ VNVVPIPNGN DGESETGGGR ITEAEERLAF KKLGDALQIP IGNQHEVPGL 300 QIDPCNLSTS VEGQADRINS SDMNEEVRTN FHFDFCYEIF NMKHKKYIGN VN

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MSWGLFTVPP GYRLRPTDEE LLSDLEKQNQ GKDSQIMSII PEIEVCKHEP RELPGDPSPE  60
PEHHQFQLLL LMIQSCLLCC VFAELAFRRR QNLGRKLFFF FFFWFTRAES WYSQGKWYFF  120
APREYKYPKS NRSNRTTGEG SWKVTSKDRD IKAPGTKAVI GRKRTLTFYI KRGVLKPQKT  180
GWVIHEYYLT RANSDEQIGD FVVCCLKYKS DNSDHHEDAP FFYRGSGSGS CSMVSNVANQ  240
AEENLASNEQ VNVVPIPNGN DGESETGGGR ITEAEERLAF KKLGDALQIP IGNQHEVPGL  300
QIDPCNLSTS VEGQADRINS SDMNEEVRTN FHFDFCYEIF NMKHKKYIGN VN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	1e-23	NAC family protein