PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 444aa MW: 49026.1 Da PI: 4.694

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.4	3.4e-37	11	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkr 73 p+GfrFhPt+ee++ yL+ k +g++ e++ +i+e+++++++P dLp+ ++ + +++wyf+s+rd ky +++r RcHm_v2.0_Chr1g0361681 11 PKGFRFHPTNEEVL-SYLEMKNQGRDSEITAMIPEINLCRHDPPDLPAlvlargelldrewyvALMSWDRQWYFYSRRDYKYIKSTR 96 89********99.9*********999***********66899999999988875556789************* PP NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +nr+t++gyWk tgk+ ++++ +++++g+k+tL+fy k pk++kt+Wv+he+ l RcHm_v2.0_Chr1g0361681 97 SNRTTRNGYWKITGKELAIKAPgSKAVIGIKRTLTFYvKRGVPKPQKTNWVLHEFDL 153 ****************99666779*****5557899*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MGSSSSSLTF PKGFRFHPTN EEVLSYLEMK NQGRDSEITA MIPEINLCRH DPPDLPALVL 60 ARGELLDREW YVALMSWDRQ WYFYSRRDYK YIKSTRSNRT TRNGYWKITG KELAIKAPGS 120 KAVIGIKRTL TFYVKRGVPK PQKTNWVLHE FDLTKANSDD QIGDFVLCRL KYKSDDSDHD 180 KQVCDGGETG TGMASNVENQ AAAEGLIAEA GENLAIKEPG DAVWESDGNE HQLKGLQTDP 240 CGKDRNDLPI SVEGQSNSCN SSDSDTIKEL HDKPENLDSP SDQPPPPQPQ SPQKLGNVSP 300 TTNAHIDECR KRKVQFGDNN PSPTKQNHIS TNDVDELASN TASNSINQAA DAIPEGCSQP 360 GENLGSDPFQ SLEPLSINRE LRDFSHYNNS IGWDDMPIEG IDFSLVKFLD TVIDEGSSDG 420 HNKVVCGLVN DCSTSAIGAT LQCS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MGSSSSSLTF PKGFRFHPTN EEVLSYLEMK NQGRDSEITA MIPEINLCRH DPPDLPALVL  60
ARGELLDREW YVALMSWDRQ WYFYSRRDYK YIKSTRSNRT TRNGYWKITG KELAIKAPGS  120
KAVIGIKRTL TFYVKRGVPK PQKTNWVLHE FDLTKANSDD QIGDFVLCRL KYKSDDSDHD  180
KQVCDGGETG TGMASNVENQ AAAEGLIAEA GENLAIKEPG DAVWESDGNE HQLKGLQTDP  240
CGKDRNDLPI SVEGQSNSCN SSDSDTIKEL HDKPENLDSP SDQPPPPQPQ SPQKLGNVSP  300
TTNAHIDECR KRKVQFGDNN PSPTKQNHIS TNDVDELASN TASNSINQAA DAIPEGCSQP  360
GENLGSDPFQ SLEPLSINRE LRDFSHYNNS IGWDDMPIEG IDFSLVKFLD TVIDEGSSDG  420
HNKVVCGLVN DCSTSAIGAT LQCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-34	NAC family protein