PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0361691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 230aa MW: 26744.1 Da PI: 7.4989

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0361691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.6	1.9e-43	9	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksgyWkat 86 +GfrFhPt+eelv++yL++k++g++++ +i+e+di+++ePwdLp ++ ++ +ew++Fsk d k ++ +r+nrat++g+Wk t RcHm_v2.0_Chr1g0361691 9 RVGFRFHPTEEELVNYYLNNKIQGHDFND--IIPEMDICSYEPWDLPgFSLIKSGQEWFYFSKPDYKFRNnRSRANRATERGFWKIT 93 68********************99665..8***********766667789***9999875388********** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 gk++e++++ ++++vg k+tL+fykg+ ++g+k +Wv+hey RcHm_v2.0_Chr1g0361691 94 GKEREIKAReSKAVVGKKRTLTFYKGKVRRGQKNNWVIHEYY 135 ***99566779************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MATAAVELRV GFRFHPTEEE LVNYYLNNKI QGHDFNDIIP EMDICSYEPW DLPGFSLIKS 60 GQEWFYFSKP DYKFRNNRSR ANRATERGFW KITGKEREIK ARESKAVVGK KRTLTFYKGK 120 VRRGQKNNWV IHEYYIPETL LPNAAKQRDF VLCRLKKKDE NTEIGACDEG EPRTNDQSDF 180 ENLLALVHTA GVPEENTRPE EILGSLFSSR ASPELPQSDD YFSSMLRGNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-46	NAC family protein